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Blooms of sequence-specific culturable bacteria in the sea
Department of Microbiology, University of Umeå. (Forskningsmiljön Man and Biosphere Health (MABH))ORCID iD: 0000-0002-8059-0156
Department of Microbiology, University of Umeå.
Scripps Institution of Oceanography 0202, University of California, San Diego, La Jolla.
Scripps Institution of Oceanography 0202, University of California, San Diego, La Jolla.
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1993 (English)In: FEMS Microbiology Letters, ISSN 0378-1097, E-ISSN 1574-6968, Vol. 102, no 3-4, 161-166 p.Article in journal (Refereed) Published
Abstract [en]

Using specific deoxyoligonucleotide probes we have discovered seasonally strong (up to ∼ 100%) dominance of bacteria hybridizing to a single probe, in near shore waters off Scripps pier (32°53′N; 117°15′W). The probes were designed from partially sequenced 16S rRNA (V3 domain) of isolated marine bacteria. The results indicate that this approach may be used for studies of bacterial populations in the marine environment. We have shown that a number of genotypes that at times are dominant in the natural assemblages are culturable (and not, ‘viable-but-unculturable’). Additionally, our data suggests that the discrepancy between viable counts and direct counts in sea water samples can be explained by low plating efficiency.

Place, publisher, year, edition, pages
1993. Vol. 102, no 3-4, 161-166 p.
Keyword [en]
Marine bacterium, Bloom, DNA probe, Identification, Colony forming
National Category
Microbiology
Identifiers
URN: urn:nbn:se:hkr:diva-10344DOI: 10.1111/j.1574-6968.1993.tb05806.xISI: A1993KY71600003OAI: oai:DiVA.org:hkr-10344DiVA: diva2:613294
Available from: 2013-03-27 Created: 2013-03-27 Last updated: 2014-06-24Bibliographically approved
In thesis
1. Use of 16S ribosomal RNA probes for the detection of marine bacteria
Open this publication in new window or tab >>Use of 16S ribosomal RNA probes for the detection of marine bacteria
1994 (English)Doctoral thesis, comprehensive summary (Other academic)
Place, publisher, year, edition, pages
Umåe: Univ., 1994. 35 p.
National Category
Microbiology
Identifiers
urn:nbn:se:hkr:diva-10356 (URN)91-7174-888-1 (ISBN)
Available from: 2013-04-03 Created: 2013-04-03 Last updated: 2014-06-24Bibliographically approved

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CiteExportLink to record
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